Index A | C | D | E | F | H | I | L | M | N | O | P | Q | R | S | T | U A aerosol atom C chromatogram collision-induced dissociation (CID) D de novo peptide sequencing E electrospray ionization F FASTA format H HPLC-MS I ion L LC-MS LuciphorAdapter M m/z Mascot Mass mass spectrum MS(1) MS(2) MS/MS MSGFPlusAdapter mzData mzML mzXML N Nightly Snapshot O Octadecyl(C18) orbitrap analyzers P PepNovo peptides proteins proteomics ProteoWizard pyOpenMS Q quadrupole mass filters R retention time S spectra T time-of-flight (TOF) TOPP TOPP Tools TOPPAS TOPPView U UTILS